Science Darmmicrobioom

Wetenschappelijke studies met betrekking tot het darmmicrobioom:

Imhann F, Vich Vila A, Bonder MJ, et al. Interplay of host genetics and gut microbiota underlying the onset and clinical presentation of inflammatory bowel disease. // Gut
Gevers D, Kugathasan S, Denson LA, et al. The treatment-naive microbiome in new-onset Crohn’s disease. // Cell Host Microbe
Kostic AD, Xavier RJ, Gevers D. The microbiome in inflammatory bowel disease: current status and the future ahead. // Gastroenterology
Schirmer, Melanie; Garner, Ashley; Vlamakis, et al. Microbial genes and pathways in inflammatory bowel disease. // Nature Reviews Microbiology
Romano KA, Vivas EI, Amador-Noguez D, et al. Intestinal microbiota composition modulates choline bioavailability from diet and accumulation of the proatherogenic metabolite trimethylamine-N-oxide. // MBio
Karlsson FH, Tremaroli V, Nookaew I, et al. Gut metagenome in European women with normal, impaired and diabetic glucose control. // Nature
Canfora, Emanuel E; Meex, Ruth C R; Venema, et al. Gut microbial metabolites in obesity, NAFLD and T2DM. // Nature Reviews Endocrinology
Lau, Wei Ling; Vaziri, Nosratola D. Gut microbial short-chain fatty acids and the risk of diabetes. // Nature Reviews Nephrology
Sokol H, Pigneur B, Watterlot L, et al. Faecalibacterium prausnitzii is an anti- inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients. // PNAS
Rajilic-Stojanovic M, Shanahan F, Guarner F, et al. Phylogenetic analysis of dysbiosis in ulcerative colitis during remission. // Inflammatory Bowel Diseases
Morgan XC, Tickle TL, Sokol H, et al. Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment. // Genome Biology
Franzosa, Eric A; Sirota-Madi, Alexandra; Avila-Pacheco, et al. Gut microbiome structure and metabolic activity in inflammatory bowel disease. // Nature Microbiology
Le Chatelier E, Nielsen T, Qin J, et al. Richness of human gut microbiome correlates with metabolic markers. // Nature
Qin J, Li Y, Cai Z, et al. A metagenome-wide association study of gut microbiota in type 2 diabetes. // Nature
Forslund K, Hildebrand F, Nielsen T, et al. Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. // Nature
Sanna, Serena; van Zuydam, Natalie R; Mahajan, et al. Causal relationships among the gut microbiome, short-chain fatty acids and metabolic diseases. // Nature Genetic
Mitsuoka T. Establishment of intestinal bacteriology // Biosci Microbiota Food Health
Karlsson FH, Fak F, Nookaew I, et al. Symptomatic atherosclerosis is associated with an altered gut metagenome. // Nature Communications
Darfeuille-Michaud A, Boudeau J, Bulois P, et al. High prevalence of adherent-invasive Escherichia coli associated with ileal mucosa in Crohn’s disease. // Gastroenterology
Geirnaert, Annelies; Calatayud, Marta; Grootaert, et al. Butyrate-producing bacteria supplemented in vitro to Crohn’s disease patient. // Scientific Reports
Gregory JC, Buffa JA, Org E, et al. Transmission of atherosclerosis susceptibility with gut microbial transplantation. // Journal of Biological Chemistry
Suzuki, Toru; Heaney, Liam M; Bhandari, et al. Trimethylamine N-oxide and prognosis in acute heart failure. // Heart (British Cardiac Society)
Yoshida, Naofumi; Yamashita, Tomoya; Hirata, et al. Gut Microbiome and Cardiovascular Diseases. // Diseases (Basel, Switzerland)
Liu, Honghong; Chen, Xi; Hu, et al. Alterations in the gut microbiome and metabolism with coronary artery disease. // Microbiome
Everard A, Belzer C, Geurts L, et al. Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity. // PNAS
Xiao S, Fei N, Pang X, et al. A gut microbiota-targeted dietary intervention for amelioration of chronic inflammation underlying metabolic syndrome. // FEMS Microbiology Ecology
Vallianou, Natalia; Stratigou, Theodora; Christodoulatos, et al. Understanding the Role of the Gut Microbiome and Microbial Metabolites in Obesity. // Current Obesity Reports
Claesson MJ, Jeffery IB, Conde S, et al. Gut microbiota composition correlates with diet and health in the elderly. // Nature
Matsuoka, Katsuyoshi; Kanai, Takanori. The gut microbiota and inflammatory bowel disease. // Seminars in Immunopathology
Li J, Lin S, Vanhoutte PM, et al. Akkermansia Muciniphila Protects Against Atherosclerosis by Preventing Metabolic Endotoxemia-Induced Inflammation in Apoe-/- Mice. // Circulation
Jie, Zhuye; Xia, Huihua; Zhong, et al. The gut microbiome in atherosclerotic cardiovascular disease. // Nature Communications
Van den Munckhof, I C L; Kurilshikov, A; Ter Horst, et al. Role of gut microbiota in chronic low-grade inflammation as potential driver for atherosclerotic cardiovascular disease: a systemic review of human studies. // Obesity Reviews
Saulnier DM, Riehle K, Mistretta TA, et al. Gastrointestinal microbiome signatures of pediatric patients with irritable bowel syndrome. // Gastroenterology
Goodrich JK, Waters JL, Poole AC, et al. Human genetics shape the gut microbiome. // Cell
Sun, Lijuan; Ma, Lanjing; Ma, et al. Insights into the role of gut microbiota in obesity: pathogenesis, mechanisms, and therapeutic perspectives. // Protein & Cell
Modi SR, Collins JJ, Relman DA. Antibiotics and the gut microbiota. // The Journal of Clinical Investigation
Mosca A, Leclerc M, Hugot JP. Gut Microbiota Diversity and Human Diseases: Should We Reintroduce Key Predators in Our Ecosystem? // Frontiers in Microbiology
Tomohiko Fujisawa, Kenji Shinohara, Yoko Kishimoto, et al. Effect of miso soup containing Natto on the composition and metabolic activity of the human faecal flora // Microbial Ecology in Health and Disease
B.C. Tungland, D. Meyer. Nondigestible Oligo- and Polysaccharides (Dietary Fiber): Their Physiology and Role in Human Health and Food. // Comprehensive Reviews in Food Science and Food Safety
Miquel S, Martín R, Rossi O, et al. Faecalibacterium prausnitzii and human intestinal health. // Current Opinion in Microbiology
O’Callaghan A, van Sinderen D. Bifidobacteria and Their Role as Members of the Human Gut Microbiota. // Frontiers in Microbiology
Mu Q, Tavella VJ, Luo XM. Role of Lactobacillus reuteri in Human Health and Diseases // Frontiers in Microbiology
Petra Louis, Georgina L. Hold and Harry J. Flint. The gut microbiota, bacterial metabolites and colorectal cancer. // Nature Reviews Microbiology
Dao MC, Everard A, Aron-Wisnewsky J, et al. Akkermansia muciniphila and improved metabolic health during a dietary intervention in obesity: relationship with gut microbiome richness and ecology. // Gut Microbiota
Fei N, Zhao L. An opportunistic pathogen isolated from the gut of an obese human causes obesity in germfree mice. // The ISME Journal
Adele Costabile, Sofia Kolida, Annett Klinder, et al. A double-blind, placebo-controlled, cross-over study to establish the bifidogenic effect of a very- long-chain inulin extracted from globe artichoke (Cynara scolymus) in healthy human subjects. // British Journal of Nutrition
G. Préstamo, A. Pedrazuela, E. Peñas, et al. Role of buckwheat diet on rats as prebiotic and healthy food. // Nutrition Research
Kaufman, D. W., Kelly, et al. Oxalobacter formigenes may reduce the risk of calcium oxalate kidney stones. // JASN
Maruo T, Sakamoto M, Ito C, et al. Adlercreutzia equolifaciens gen. nov., sp. nov., an equol-producing bacterium isolated from human faeces, and emended description of the genus Eggerthella. // International Journal of Systemic and Evolutionary Microbiology
Heeney DD, Gareau MG, Marco ML. Intestinal Lactobacillus in health and disease, a driver or just along for the ride? // Current Opinion in Biotechnology
Ubeda, C., Bucci, et al. Intestinal Microbiota Containing Barnesiella Species Cures Vancomycin-Resistant Enterococcus faecium Colonization. // Infection and Immunity
Tamanai-Shacoori Z, Smida I, Bousarghin L, et al. Roseburia spp.: a marker of health? // Future Microbiology
Núria Machab, Dolors Fuster-Botellaa. Endurance exercise and gut microbiota: A review // Journal of Sport and Health Science
Wang, Qi; Li, Fei; Liang, et al. A metagenome-wide association study of gut microbiota in asthma in UK adults. // BMC Microbiology
Warburton, D W; Bowen, B; Konkle, et al. The survival and recovery of Pseudomonas aeruginosa and its effect upon salmonellae in water. // Canadian Journal of Microbiology
Tong, Steven Y C; Davis, Joshua S; Eichenberger, et al. Staphylococcus aureus infections: epidemiology, pathophysiology, clinical manifestions, and management. // Clinical Microbiology Reviews
Lo, Y-C; Chuang, Y-W; Lin, et al. Yokenella regensburgei in an immunocompromised host: a case report and review of the literature. // Infection
Ai, Dongmei; Pan, Hongfei; Han, et al. Using Decision Tree Aggregation with Random Forest Model to Identify Gut Microbes. // Genes
Prod’homme, M; Micol, L A; Weitsch, et al. Cutaneous infection and bactaeremia caused by Erwinia billingiae: a case report. // New Microbes and New Infections
Bilen, Melhem; Fonkou, Maxime Descartes, Mbogning; Tomei, et al. Eggerthella timonensis sp. nov, a new species isolated from the stool sample of a pygmee female. // MicrobiologyOpen
Zhao, Yan; Li, Kun; Luo, et al. Comparison of the Intestinal Microbial Community in Ducks Reared Differently. // BioMed Research International
You, Young-Ah; Yoo, Jae Young; Kwon, et al. Blood Microbial Communities During Pregnancy Are Associated With Preterm Birth. // Frontiers in Microbiology
LaRock, Doris L; Chaudhary, Anu; Miller, et al. Salmonellae interactions with host processes. // Nature Reviews Microbiology
Galindo, Cristi L; Rosenzweig, Jason A; Kirtley, et al. Pathogenesis of Y. enterocolitica and Y. pseudotuberculosis in Human Yersiniosis. // Journal of Pathogens
Richet, H. Seasonality in Gram-negative and healthcare-associated infections. // Clinical Microbiology and Infection
Maini Rekdal, Vayu; Bess, Elizabeth N; Bisanz, et al. Discovery and inhibition of an interspecies gut bacterial pathway for Levodopa // Science
Bouza, Emilio; Cercenado, Emilia. Klebsiella and enterobacter: antibiotic resistance and treatment implications. // Seminars in Respiratory Infections
Walter, Jens; Ley, Ruth. The human gut microbiome: ecology and recent evolutionary changes. // Annual Review of Microbiology
Hylemon, Phillip B; Harris, Spencer C; Ridlon, et al. Metabolism of hydrogen gases and bile acids in the gut microbiome. // FEBS Letters
Ugarte-Torres, Alejandra; Gillrie, Mark R; Griener, et al. Eggerthella lenta Bloodstream Infections Are Associated With Increased Mortality. // Clinical Infectious Diseases
Kanki, Masashi; Yoda, Tomoko; Tsukamoto, et al. Klebsiella pneumoniae produces no histamine: Raoultella planticola and Raoultella. // Applied and Environmental Microbiology
Dearlove, Bethany L; Cody, Alison J; Pascoe, et al. Rapid host switching in generalist Campylobacter strains erodes the signal for tracing human infections. // The ISME Journal
Austin, B. Vibrios as causal agents of zoonoses. // Veterinary Microbiology
Surawicz, Christina M; Brandt, Lawrence J; Binion, et al. Guidelines for diagnosis, treatment, and prevention of Clostridium difficile. // American Journal of Gastroenterology
Wang, Wei; Chen, Liping; Zhou, et al. Increased proportions of Bifidobacterium and the Lactobacillus group and loss of butyrate-producing bacteria in inflammatory bowel disease. // Journal of Clinical Microbiology
Riviere, Audrey; Selak, Marija; Lantin, et al. Bifidobacteria and Butyrate-Producing Colon Bacteria: Importance and Strategies. // Frontiers in Microbiology
Kieler, Ida Nordang; Osto, Melania; Hugentobler, et al. Diabetic cats have decreased gut microbial diversity and a lack of butyrate. // Scientific Reports
Nataro, J P; Kaper, J B. Diarrheagenic Escherichia coli. // Clinical Microbiology Reviews
Choi, Sang-Ho; Lee, Jung Eun; Park, et al. Emergence of antibiotic resistance during therapy for infections caused by Enterobacteriaceae producing AmpC Beta Lactamase.  // Antimicrobial Agents and Chemotherapy
Flint HJ, Scott KP, Duncan SH, et al. Microbial degradation of complex carbohydrates in the gut. // Gut Microbes
Lupton JR. Microbial degradation products influence colon cancer risk: the butyrate controversy. // Journal of Nutrition
Petra Louis, Harry J. Flint. Formation of propionate and butyrate by the human colonic microbiota. // Environmental Microbiology
Louis, Petra; Young, Pauline; Holtrop, et al. Diversity of human colonic butyrate-producing bacteria revealed by analysis of butyryl CoA: acetate CoA-transferase gene. // Environmental Microbiology
Moseley, S L; Echeverria, P; Seriwatana, et al. Identification of enterotoxigenic Escherichia coli by colony hybridization using three enterotoxin gene probes. // The Journal of Infectious Diseases
Machiels K, Joossens M, Sabino J, et al. A decrease of the butyrate-producing species Roseburia hominis and Faecalibacterium prausnitzii defines dysbiosis in patients with ulcerative colitis. // Gut
Koh A, De Vadder F, Kovatcheva-Datchary P, et al. From Dietary Fiber to Host Physiology: Short- Chain Fatty Acids as Key Bacterial Metabolites. // Cell
Topping DL, Clifton PM. Short-chain fatty acids and human colonic function: roles of resistant starch and nonstarch polysaccharides. // Physiological Reviews
Takaishi, Hiromasa; Matsuki, Takahiro; Nakazawa, et al. Imbalance in intestinal microflora constitution could be involved in the pathogenesis of inflammatory bowel disease. // International Journal of Medical Microbiology
Hayashi, Atsushi; Sato, Toshiro; Kamada, et al. A Single Strain of Clostridium butyricum Induces Intestinal IL-10-Producing Macrophages to Suppress Acute Experimental Colitis in Mice. // Cell Host & Microbe
Takahashi, Kenichiro; Nishida, Atsushi; Fujimoto, et al. Reduced Abundance of Butyrate-Producing Bacteria Species in the Fecal Microbial Community in Crohn’s Disease. // Digestion
Sun, Mingming; Wu, Wei; Liu, et al. Microbiota metabolite short chain fatty acids, GPCR, and inflammatory bowel diseases. // Journal of Gastroenterology
Chen, Liang; Sun, Mingming; Wu, et al. Microbiota Metabolite Butyrate Differentially Regulates Th1 and Th17 Cells’ Differentiation and Function in Induction of Colitis. // Inflammatory Bowel Diseases
Ramakrishna BS. Role of the gut microbiota in human nutrition and metabolism. // Journal of Gastroenterology and Hepatology
Hollander D, Rim E, Ruble PE Jr. Vitamin K2 colonic and ileal in vivo absorption: bile, fatty acids, and pH effects on transport. // American Journal of Physiology
Gast GC, de Roos NM, Sluijs I, et al. A high menaquinone intake reduces the incidence of coronary heart disease. // Nutrition, Metabolism & Cardiovascular Diseases
Knapen MH, Braam LA, Drummen NE, et al. Menaquinone-7 supplementation improves arterial stiffness in healthy postmenopausal women. A double-blind randomised clinical trial. // Thromb Haemost
Frick PG, Riedler G, Brögli H. Dose response and minimal daily requirement for vitamin K in man. // Journal of Applied Physiology
LeBlanc JG, Milani C, de Giori GS, et al. Bacteria as vitamin suppliers to their host: a gut microbiota perspective. // Current Opinion in Biotechnology
Magnúsdóttir S, Ravcheev D, de Crécy-Lagard V, et al. Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes. // Frontiers in Genetics
Sharma V, Rodionov DA, Leyn SA, et al. B-Vitamin Sharing Promotes Stability of Gut Microbial Communities. // Frontiers in Microbiology
Zhao R, Matherly LH, Goldman ID. Membrane transporters and folate homeostasis: intestinal absorption and transport into systemic compartments and tissues. // Expert Reviews in Molecular Medicine
Nabokina SM, Subramanian VS, Said HM. Association of PDZ-containing protein PDZD11 with the human sodium-dependent multivitamin transporter. // American Journal of Physiology-Gastrointestinal and Liver Physiology
Karl JP, Fu X, Wang X, et al. Fecal menaquinone profiles of overweight adults are associated with gut microbiota composition during a gut microbiota-targeted dietary intervention. // American Journal of Clinical Nutrition
Beulens JW, Booth SL, van den Heuvel EG, et al. The role of menaquinones (vitamin K2) in human health. // British Journal of Nutrition
Shea MK, O’Donnell CJ, Hoffmann U, et al. Vitamin K supplementation and progression of coronary artery calcium in older men and women. // American Journal of Clinical Nutrition
Geleijnse JM, Vermeer C, Grobbee DE, et al. Dietary intake of menaquinone is associated with a reduced risk of coronary heart disease: the Rotterdam Study. // Journal of Nutrition
Booth SL, Suttie JW. Dietary intake and adequacy of vitamin K. // Journal of Nutrition
Said HM. Intestinal absorption of water-soluble vitamins in health and disease. // Biochemical Journal
Rodionov DA, Arzamasov AA, Khoroshkin MS, et al. Micronutrient Requirements and Sharing Capabilities of the Human Gut Microbiome. // Frontiers in Microbiology
Dudeja PK, Kode A, Alnounou M, et al. Mechanism of folate transport across the human colonic basolateral membrane. // American Journal of Physiology-Gastrointestinal and Liver Physiology
Said HM, Ortiz A, McCloud E, et al. Biotin uptake by human colonic epithelial NCM460 cells: a carrier-mediated process shared with pantothenic acid. // American Journal of Physiology
Prasad PD, Wang H, Huang W, et al. Molecular and functional characterization of the intestinal Na+-dependent multivitamin transporter. // Archives of Biochemistry and Biophysics
Kumar JS, Subramanian VS, Kapadia R, et al. Mammalian colonocytes possess a carrier- mediated mechanism for uptake of vitamin B3 (niacin): studies utilizing human and mouse colonic preparations. // American Journal of Physiology-Gastrointestinal and Liver Physiology
Yonezawa A, Masuda S, Katsura T, et al. Identification and functional characterization of a novel human and rat riboflavin transporter, RFT1. // American Journal of Physiology-Cell Physiology
Nabokina SM,Said HM. A high-affinity and specific carrier-mediated mechanism for uptake of thiamine pyrophosphate by human colonic epithelial cells. // American Journal of Physiology-Gastrointestinal and Liver Physiology
Anderson JW, Baird P, Davis RH Jr, et al. Health benefits of dietary fiber. // Nutrition Reviews
Makki, Kassem; Deehan, Edward C; Walter, et al. In Vitro Fermentation of Selected Prebiotics and Their Effects on the Composition. // International Journal of Molecular Sciences
Santacruz A, Collado MC, García-Valdés L, et al. Gut microbiota composition is associated with body weight, weight gain and biochemical parameters in pregnant women. // British Journal of Nutrition
Magnúsdóttir S, Heinken A, Kutt L, et al. Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota. // Nature Biotechnology
Despres, Jordane; Forano, Evelyne; Lepercq, et al. Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis. // BMC Genomics
Blatchford, Paul; Stoklosinski, Halina; Eady, et al. Consumption of kiwifruit capsules increases Faecalibacterium prausnitzii abundance in functionally constipated individuals: a randomised controlled human trial. // Journal of Nutritional Science
Makki, Kassem; Deehan, Edward C; Walter, et al. The Impact of Dietary Fiber on Gut Microbiota in Host Health and Disease. // Cell Host & Microbe
Gough, Ronan; Cabrera Rubio, Raul; O’Connor, et al. Oral Delivery of Nisin in Resistant Starch Based Matrices Alters the Gut. // Frontiers in Microbiology
Carlson, Justin L; Erickson, Jennifer M; Lloyd, et al. Health Effects and Sources of Prebiotic Dietary Fiber. // Current Developments in Nutrition
Ramnani P, Costabile A, Bustillo AG, et al. A randomised, double- blind, cross-over study investigating the prebiotic effect of agave fructans in healthy human subjects. // Journal of Nutritional Science
Bothe, Melanie K.; Maathuis, Annet J. H.; Bellmann, et al. Dose-dependent prebiotic effect of lactulose in a computer-controlled in vitro model of the human large intestine. // Nutrients
Subramanian VS, Subramanya SB, Rapp L, et al. Differential expression of human riboflavin transporters -1, -2, and -3 in polarized epithelia: a key role for hRFT-2 in intestinal riboflavin uptake. // Biochimica et Biophysica Acta (BBA) – Biomembranes
Snell EE. Nutrition research with lactic acid bacteria: a retrospective view. // Annual Review of Nutrition
Tuohy KM, Conterno L, Gasperotti M, et al. Up-regulating the human intestinal microbiome using whole plant foods, polyphenols, and/or fiber. // Journal of Agricultural and Food Chemistry
Zhang, Na; Ju, Zhongjie; Zuo, et al. Time for food: The impact of diet on gut microbiota and human health. // Nutrition
Fehlbaum, Sophie; Prudence, Kevin; Kieboom, et al. In Vitro Fermentation of Selected Prebiotics and Their Effects on the Composition and Activity of the Adult Gut Microbiota. // International Journal of Molecular Sciences
Holscher, Hannah D. Dietary fiber and prebiotics and the gastrointestinal microbiota. // Gut Microbes
Stadlbauer V, Leber B, Lemesch S, et al. Lactobacillus casei Shirota Supplementation Does Not Restore Gut Microbiota Composition and Gut Barrier in Metabolic Syndrome: A Randomized Pilot Study. // PLoS One
Rakoff-Nahoum, Seth; Foster, Kevin R.; Comstock, et al. The evolution of cooperation within the gut microbiota. // Nature
Monaco, Marcia H; Wang, Mei; Pan, et al. Evaluation of Sialyllactose Supplementation of a Prebiotic-Containing Formula on Growth, Intestinal Development, and Bacterial Colonization in the Neonatal Piglet. // Current Developments in Nutrition
Dominianni C, Sinha R, Goedert JJ, et al. Sex, Body Mass Index, and Dietary Fiber Intake Influence the Human Gut Microbiome. // PLoS One
Le Bourgot, Cindy; Apper, Emmanuelle; Blat, et al. Fructo-oligosaccharides and glucose homeostasis: a systematic review and meta-analysis in animal models. // Nutrition & Metabolism
Li, Mao; Zhou, Hanlin; Pan, et al. Cassava foliage affects the microbial diversity of Chinese indigenous geese caecum using 16S rRNA sequencing. // Scientific Reports
Lozupone CA, Stombaugh JI, Gordon JI, et al. Diversity, stability and resilience of the human gut microbiota. // Nature
Hardy H, Harris J, Lyon E, et al. Probiotics, Prebiotics and Immunomodulation of Gut Mucosal Defences: Homeostasis and Immunopathology. // Nutrients
Ferreira-Lazarte, Alvaro; Kachrimanidou, Vasiliki; Villamiel, et al. In vitro fermentation properties of pectins and enzymatic-modified pectins obtained from different renewable bioresources. // Carbohydrate Polymers
Cooper, Danielle N; Kable, Mary E; Marco, et al. The Effects of Moderate Whole Grain Consumption on Fasting Glucose and Lipids, Gastrointestinal Symptoms, and Microbiota. // Nutrients
Pereira, Fátima C.; Berry, David. Microbial nutrient niches in the gut. // Environmental Microbiology
Li, Jing; Hou, Qiangchuan; Zhang, et al. Carbohydrate Staple Food Modulates Gut Microbiota of Mongolians in China. // Frontiers in Microbiology
Delzenne NM, Neyrinck AM, Cani PD. Modulation of the gut microbiota by nutrients with prebiotic properties: consequences for host health in the context of obesity and metabolic syndrome. // Microbial Cell Factories
Miquel S, Martín R, Bridonneau C, et al. Ecology and metabolism of the beneficial intestinal commensal bacterium Faecalibacterium prausnitzii // Gut Microbes
Abstracts from the International Congress of the Society for Microbial Ecology and Disease SOMED 2013 Proceedings September 23th–26th 2013, Kosice, Slovakia. // Microbial Ecology in Health and Disease
Khan MT, van Dijl JM, Harmsen HJ. Antioxidants keep the potentially probiotic but highly oxygen-sensitive human gut bacterium Faecalibacterium prausnitzii alive at ambient air. // PLoS One
Chung WS, Walker AW, Louis P, et al. Modulation of the human gut microbiota by dietary fibres occurs at the species level. // BMC Biology
Kabeerdoss J, Sankaran V, Pugazhendhi S, et al. Clostridium leptum group bacteria abundance and diversity in the fecal microbiota of patients with inflammatory bowel disease: a case-control study in India. // BMC Gastroenterology
Jeffery IB, O’Toole PW. Diet-microbiota interactions and their implications for healthy living. // Nutrients
Sasaki, Daisuke; Sasaki, Kengo; Ikuta, et al. Low amounts of dietary fibre increase in vitro production of short-chain fatty acids without changing human colonic microbiota structure. // Scientific Reports
Pham, Van T; Seifert, Nicole; Richard, et al. The effects of fermentation products of prebiotic fibres on gut barrier and immune functions in vitro. // PeerJ
Umu ÖC, Frank JA, Fangel JU, et al. Resistant starch diet induces change in the swine microbiome and a predominance of beneficial bacterial populations. // Microbiome
Thomas LV, Ockhuizen T, Suzuki K. Exploring the influence of the gut microbiota and probiotics on health: a symposium report. // British Journal of Nutrition
Gerritsen J, Smidt H, Rijkers GT, et al. Intestinal microbiota in human health and disease: the impact of probiotics. // Genes Nutrition
Magrone T, Jirillo E. Childhood obesity: immune response and nutritional approaches. // Frontiers in Immunology
Kovatcheva-Datchary P, Zoetendal EG, Venema K, et al. Tools for the tract: understanding the functionality of the gastrointestinal tract. // Therapeutic Advanced in Gastroenterology
Conlon MA, Kerr CA, McSweeney CS, et al. Resistant starches protect against colonic DNA damage and alter microbiota and gene expression in rats fed a Western diet. // Journal of Nutrition
Pham, Tung; Teoh, Keat Thomas; Savary, et al. In Vitro Fermentation Patterns of Rice Bran Components by Human Gut Microbiota. // Nutrients
Centanni, Manuela; Lawley, Blair; Butts, et al. Bifidobacterium pseudolongum in the Ceca of Rats Fed Hi-Maize Starch Has Characteristics of a Keystone Species in Bifidobacterial Blooms. // Applied and Environmental Microbiology
Brüssow H. Microbiota and healthy ageing: observational and nutritional intervention studies. // Microbial Biotechnology
Clarke SF, Murphy EF, Nilaweera K, et al. The gut microbiota and its relationship to diet and obesity: new insights. // Gut Microbes
Tyakht AV, Kostryukova ES, Popenko AS, et al. Human gut microbiota community structures in urban and rural populations in Russia. // Nature Communications
Cockburn DW, Orlovsky NI, Foley MH, et al. Molecular details of a starch utilization pathway in the human gut symbiont Eubacterium rectale. // Molecular Microbiology
Rajilić-Stojanović M, Jonkers DM, Salonen A, et al. Intestinal microbiota and diet in IBS: causes, consequences, or epiphenomena? // American Journal of Gastroenterology
Ze X, Le Mougen F, Duncan SH, et al. Some are more equal than others: the role of “keystone” species in the degradation of recalcitrant substrates. // Gut Microbes
Walker AW, Ince J, Duncan SH, et al. Dominant and diet-responsive groups of bacteria within the human colonic microbiota. // ISME Journal
Kalmokoff M, Franklin J, Petronella N, et al. Phylum level change in the cecal and fecal gut communities of rats fed diets containing different fermentable substrates supports a role for nitrogen as a factor contributing to community structure. // Nutrients
Dueñas M, Muñoz-González I, Cueva C, et al. A Survey of Modulation of Gut Microbiota by Dietary Polyphenols. // BioMed Research International
Chen, Tingting; Long, Wenmin; Zhang, et al. Fiber-utilizing capacity varies in Prevotella- versus Bacteroides-dominated gut microbiota. // Scientific Reports
Liu S, Ren F, Zhao L, et al. Starch and starch hydrolysates are favorable carbon sources for Bifidobacteria in the human gut. // BMC Microbiology
Cavallini DC, Suzuki JY, Abdalla DS, et al. Influence of a probiotic soy product on fecal microbiota and its association with cardiovascular risk factors in an animal model. // Lipids in Health and Disease
Claassen E. Cost-benefit relation of diet and probiotics in iatrogenic bowel irregularity (IBI). // Frontiers in Pharmacology
Aguirre M, Jonkers DM, Troost FJ, et al. In vitro characterization of the impact of different substrates on metabolite production, energy extraction and composition of gut microbiota from lean and obese subjects. // PLoS One
Sierra C, Bernal MJ, Blasco J, et al. Prebiotic effect during the first year of life in healthy infants fed formula containing GOS as the only prebiotic: a multicentre, randomised, double- blind and placebo-controlled trial. // European Journal of Nutrition
Krumbeck JA, Maldonado-Gomez MX, Martínez I, et al. In vivo selection to identify bacterial strains with enhanced ecological performance in synbiotic applications. // Applied and Environmental Microbiology
Graf D, Di Cagno R, Fåk F, et al. Contribution of diet to the composition of the human gut microbiota. // Microbial Ecology in Health and Disease
Yin, Yeshi; Fan, Bin; Liu, et al. Investigation into the stability and culturability of Chinese enterotypes. // Scientific Reports
Nakatsu CH, Armstrong A, Clavijo AP, et al. Fecal Bacterial Community Changes Associated with Isoflavone Metabolites in Postmenopausal Women after Soy Bar Consumption. // PLoS One
Tousen Y, Uehara M, Kruger MC, et al. Effects of dietary fibre and tea catechin, ingredients of the Japanese diet, on equol production and bone mineral density in isoflavone- treated ovariectomised mice. // Journal of Nutritional Science
Pokusaeva K, Fitzgerald GF, van Sinderen D. Carbohydrate metabolism in Bifidobacteria. // Genes Nutrition
Fernández M, Hudson JA, Korpela R, et al.
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